PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004489691.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family ERF
Protein Properties Length: 302aa    MW: 34057 Da    PI: 6.9174
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004489691.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.56e-173281255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    ++ GVr+++ +gr+vAeI+d ++   + r +lg+f taeeAa+a+++a+  l+g
  XP_004489691.1 32 KFVGVRQRP-SGRYVAEIKDTTQ---NIRMWLGTFETAEEAARAYDEAATLLRG 81
                    799******.7*********433...5**********************98887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.1E-323295IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.7E-263289IPR001471AP2/ERF domain
PfamPF008471.8E-113281IPR001471AP2/ERF domain
SuperFamilySSF541712.55E-183290IPR016177DNA-binding domain
PROSITE profilePS5103218.7553289IPR001471AP2/ERF domain
CDDcd000182.97E-293288No hitNo description
PRINTSPR003674.6E-73344IPR001471AP2/ERF domain
PRINTSPR003674.6E-75571IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MEIQFEEPKK SLRPKSDNKF KGRIKKYETK NKFVGVRQRP SGRYVAEIKD TTQNIRMWLG  60
TFETAEEAAR AYDEAATLLR GSNTRTNFVT RVSLDSPLAS RIKNLLNNRI KGTKPQQEHM  120
NVKSKTIDHV NTVSDITNST TNRVSTIHDM TISNSANSVS INSTIDGTSA RSVTSTNSLI  180
STNSSNNNVD EKSDSISSIM TIENKRLFDD AYRPDLSNFN ELSSKSNVSC GFDPFFDNFM  240
SNNDGILCDL VELGDSQFER MKVERQISAS LYAINGVHEY METFQDCNEA LWNLPPFCSF  300
LC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-163393667ATERF1
3gcc_A1e-163393667ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1568271e-111AC156827.4 Medicago truncatula chromosome 6 clone mth2-15c17, complete sequence.
GenBankEU0388031e-111EU038803.2 Medicago truncatula ERN2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004489691.10.0PREDICTED: ethylene-responsive transcription factor RAP2-11-like
TrEMBLA9Y0K81e-123A9Y0K8_MEDTR; AP2 domain class transcription factor
STRINGGLYMA02G08020.16e-85(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33413069
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.13e-24related to AP2 11